Looks like it was drive going bad
Its unfortunately going to be a while still. They are in the process of recovering everything from the bad drive. The tech guy is telling me the only stuff that seems to be messed up is the apache stuff, so they are manually reinstalling all that. Says that so far all the content seems to be coming back fine, so hopefully I dont have any problems with losing stuff.
If anything as far as free sites doesnt get recovered I have all those on my computer and can upload all of them again. So please just bare with me on this and PLEASE dont remove my links. I am very very sorry for all of this. Didnt know I was waking up to a fucking nightmare today.